Abstract: Through many years of development, the protected agriculture of Turpan City developed quickly with a certain scale, obtaining the obvious result, and accurmulating certain experience, but there still existed many problems, such as shortage of investment, small scale, lack of brand of products, imperfect service of production in medium and postnatal period etc., which caused low overall economic performance. By analysis and researches of these prolems, the author draw a conclusion that the development of the protected agriculture of Turpan City depands on science and technology innovation, based on raising quality and efficiency, and the construction of bases and market system.